SRX5453200
ATAC-seq of Mus musculus CD4 Tcells: Gut small intestine MafKO S7

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
dev_stage
adult
sex
pooled male and female
tissue
Gut_small intestine
birth_location
WEHI, Melbourne
cell_type
CD4 T cell
genotype
MafKO, Foxp3KO
sample_type
ATAC-seq
replicate
No biological replicates

Sequenced DNA Library

library_name
SI-CD4-KO-71_S7
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
57839314
Reads aligned (%)
75.3
Duplicates removed (%)
38.0
Number of peaks
16063 (qval < 1E-05)

mm9

Number of total reads
57839314
Reads aligned (%)
75.2
Duplicates removed (%)
38.0
Number of peaks
16043 (qval < 1E-05)

Base call quality data from DBCLS SRA