Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
shNT_1
cell line
LNCaP/AR cells
transduction
shNT
genotype
control

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
DNA and ATAC-seq samples were generated as previously described protocol (Buenrostro et al 2016). RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
41135980
Reads aligned (%)
95.2
Duplicates removed (%)
66.4
Number of peaks
33181 (qval < 1E-05)

hg19

Number of total reads
41135980
Reads aligned (%)
95.0
Duplicates removed (%)
66.5
Number of peaks
33057 (qval < 1E-05)

Base call quality data from DBCLS SRA