Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cardiovascular
Cell type
Ventricular fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
adult rat ventricular fibroblasts
cell line
ARVF
strain
Sprague-Dawley
antibody
anti-RNA Pol II (39097, Active Motif)
treatment
GF-β1 (10ng/mL; Novoprotein)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Anti-BRD4 (301-985, Bethyl Laboratories) and anti-RNA Pol II (39097, Active Motif) Chromatin Immunoprecipitation was performed as previously described 33. Five independent 10-cm plates of ARVFs were combined per immunoprecipitation. Libraries were prepared using the Rubicon TruPLEX Tag-seq kit and submitted to the UC Denver Genomics and Microarray core facility for sequencing (HiSeq2000).

Sequencing Platform

instrument_model
Illumina HiSeq 2000

rn6

Number of total reads
54156347
Reads aligned (%)
86.3
Duplicates removed (%)
16.6
Number of peaks
17595 (qval < 1E-05)

Base call quality data from DBCLS SRA