SRX5416990
ChIP-Seq of Mus Musculus: TS D2 J2b

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA

Attributes by original data submitter

Sample

strain
not applicable
isolate
not applicable
breed
not applicable
cultivar
not applicable
ecotype
not applicable
age
not applicable
dev_stage
not applicable
sex
not applicable
tissue
not applicable
cell_line
RS26
cell_type
Trophoblast stem cells
sample_type
cell culture
treatment
D2_J2b
replicates
2

Sequenced DNA Library

library_name
TS_D2-Rep2_J2b
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41432789
Reads aligned (%)
91.8
Duplicates removed (%)
24.1
Number of peaks
38963 (qval < 1E-05)

mm9

Number of total reads
41432789
Reads aligned (%)
91.7
Duplicates removed (%)
24.1
Number of peaks
38881 (qval < 1E-05)

Base call quality data from DBCLS SRA