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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Trophoblast stem cells
ATCC
MeSH
RIKEN BRC
SRX5416977
ChIP-Seq of Mus Musculus: TS D6 K9
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Placenta
Cell type
Trophoblast stem cells
NA
NA
Attributes by original data submitter
Sample
strain
not applicable
isolate
not applicable
breed
not applicable
cultivar
not applicable
ecotype
not applicable
age
not applicable
dev_stage
not applicable
sex
not applicable
tissue
not applicable
cell_line
RS26
cell_type
Trophoblast stem cells
sample_type
cell culture
treatment
D6_K9
replicates
1
Sequenced DNA Library
library_name
TS_D6-Rep1_K9
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 1500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
44338011
Reads aligned (%)
89.2
Duplicates removed (%)
32.0
Number of peaks
26438 (qval < 1E-05)
mm9
Number of total reads
44338011
Reads aligned (%)
89.0
Duplicates removed (%)
32.2
Number of peaks
26450 (qval < 1E-05)
Base call quality data from
DBCLS SRA