Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ALKBH3

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
PC3
chip antibody
ALKBH3 Millipore (#09-882)
cell line
PC3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were extracted using ALKBH3 or IgG antibodies and subsequent purified. Libraries were constructed of 50 ng of ChIP DNA following Illumina’s® protocol

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
25008871
Reads aligned (%)
60.1
Duplicates removed (%)
32.9
Number of peaks
1256 (qval < 1E-05)

hg38

Number of total reads
25008871
Reads aligned (%)
62.0
Duplicates removed (%)
31.4
Number of peaks
1047 (qval < 1E-05)

Base call quality data from DBCLS SRA