SRX540678
RWPE-1 ERG IP TEAD4-1 Chip-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sex
male
tissue
prostate
cell_line
RWPE-1_ERG
cell_type
epithelial
isolate
RWPE-1_ERG immortalized nontumorigenic prostate epithelial cell line
sample_type
cell culture
treatment
RWPE-1_ERG gDNA immunoprepitated with anti TEAD4 antibody. .
biomaterial_provider
ATCC
age
54
race
Caucasian

Sequenced DNA Library

library_name
RWPE-1_ERG_IP_TEAD4-1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29712474
Reads aligned (%)
94.5
Duplicates removed (%)
3.0
Number of peaks
24960 (qval < 1E-05)

hg19

Number of total reads
29712474
Reads aligned (%)
93.5
Duplicates removed (%)
3.1
Number of peaks
25108 (qval < 1E-05)

Base call quality data from DBCLS SRA