Toggle navigation
Peak Browser
Enrichment Analysis
Diff Analysis
Target Genes
Colocalization
Publications
Docs
Search
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: RWPE-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX540672
RWPE-1 Ctrl IP TEAD4-2 Chip-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
sex
male
tissue
prostate
cell_line
RWPE-1_Ctrl
cell_type
epithelial
isolate
RWPE-1_Ctrl immortalized nontumorigenic prostate epithelial cell line
sample_type
cell culture
treatment
RWPE-1_Ctrl gDNA immunoprepitated with anti TEAD4 antibody. .
biomaterial_provider
ATCC
age
54
race
Caucasian
Sequenced DNA Library
library_name
RWPE-1_Ctrl_IP_TEAD4-2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
33538270
Reads aligned (%)
94.7
Duplicates removed (%)
3.7
Number of peaks
21835 (qval < 1E-05)
hg19
Number of total reads
33538270
Reads aligned (%)
93.6
Duplicates removed (%)
3.8
Number of peaks
21506 (qval < 1E-05)
Base call quality data from
DBCLS SRA