Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Breast

Cell type

T-47D

Primary Tissue

Breast

Tissue Diagnosis

Adenocarcinoma Ductal

Sample

source_name

T47D A1/2 cells

cell type

Mammary epithelial cells

cell line

T47D A1/2 cells

chip antibody

None

agent

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

193456884

Reads aligned (%)

96.6

Duplicates removed (%)

15.5

Number of peaks

3984 (qval < 1E-05)

hg19

Number of total reads

193456884

Reads aligned (%)

95.6

Duplicates removed (%)

17.4

Number of peaks

2611 (qval < 1E-05)