Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer-derived fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
PCDF1_R1881_AR
cell type
prostate cancer-derived fibroblasts
group
PCDF1
treatment
R1881
chip antibody
AR (Santa Cruz; sc-816,lot: I0215)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
31167476
Reads aligned (%)
79.8
Duplicates removed (%)
6.3
Number of peaks
1273 (qval < 1E-05)

hg38

Number of total reads
31167476
Reads aligned (%)
81.4
Duplicates removed (%)
5.2
Number of peaks
1199 (qval < 1E-05)

Base call quality data from DBCLS SRA