Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
Prostate cancer-derived fibroblasts
NA
NA

Attributes by original data submitter

Sample

source_name
PCDF1_veh_AR
cell type
prostate cancer-derived fibroblasts
group
PCDF1
treatment
veh
chip antibody
AR (Santa Cruz; sc-816,lot: I0215)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
31065570
Reads aligned (%)
90.4
Duplicates removed (%)
2.1
Number of peaks
949 (qval < 1E-05)

hg19

Number of total reads
31065570
Reads aligned (%)
89.6
Duplicates removed (%)
3.5
Number of peaks
979 (qval < 1E-05)

Base call quality data from DBCLS SRA