Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Lymph Nodes
MeSH Description
They are oval or bean shaped bodies (1 - 30 mm in diameter) located along the lymphatic system.

Attributes by original data submitter

Sample

source_name
spleens and lymph nodes
strain
C57BL/6
chip antibody
input sample
genotype
Bach2-/-

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA libraries were prepared using the TruSeq RNA Sample preparation kit (Illumina) following the manufacturer's instructions.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
35515982
Reads aligned (%)
88.5
Duplicates removed (%)
16.8
Number of peaks
256 (qval < 1E-05)

mm9

Number of total reads
35515982
Reads aligned (%)
88.1
Duplicates removed (%)
17.0
Number of peaks
267 (qval < 1E-05)

Base call quality data from DBCLS SRA