SRX5392109
GSM3612600: b6 cast lcmv cd8 d07 chip r4 tbet; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
B6/Cast F1 Spleen activated CD8 T cell
strain
B6/Cast F1
tissue
Spleen
cell type
Activated CD8 T cell
time point
d07

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Kapa Hyper Prep Kit. Qiagen MinElute PCR purification kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32525754
Reads aligned (%)
94.5
Duplicates removed (%)
42.3
Number of peaks
324 (qval < 1E-05)

mm9

Number of total reads
32525754
Reads aligned (%)
94.3
Duplicates removed (%)
43.2
Number of peaks
316 (qval < 1E-05)

Base call quality data from DBCLS SRA