SRX5392096
GSM3612587: b6 cast lcmv cd8 nav chip r4 cbfb; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
Naive T cells
NA
NA

Attributes by original data submitter

Sample

source_name
B6/Cast F1 Spleen naïve CD8 T cell
strain
B6/Cast F1
tissue
Spleen
cell type
Naive CD8 T cell

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Kapa Hyper Prep Kit. Qiagen MinElute PCR purification kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
55302135
Reads aligned (%)
83.7
Duplicates removed (%)
54.7
Number of peaks
2783 (qval < 1E-05)

mm9

Number of total reads
55302135
Reads aligned (%)
83.5
Duplicates removed (%)
55.4
Number of peaks
2782 (qval < 1E-05)

Base call quality data from DBCLS SRA