SRX5392043
GSM3612534: b6 cast lcmv cd8 nav r2 ATACseq; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Naive T cells
NA
NA

Attributes by original data submitter

Sample

source_name
B6/Cast F1 Spleen naïve CD8 T cell
strain
B6/Cast F1
tissue
Spleen
cell type
Naive CD8 T cell

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nextera Qiagen MinElute reaction cleanup kit.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
19372102
Reads aligned (%)
41.8
Duplicates removed (%)
10.0
Number of peaks
17555 (qval < 1E-05)

mm9

Number of total reads
19372102
Reads aligned (%)
41.8
Duplicates removed (%)
10.1
Number of peaks
17558 (qval < 1E-05)

Base call quality data from DBCLS SRA