SRX5389703
CTCF of mus musculus : P51 female cortex homogenate

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Brain cortex
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6J SJL
isolate
pool of 5 mouse
age
P51
sex
female
tissue
Brain cortex
birth_date
2011
birth_location
PRBB - Barcelona
cell_subtype
Homogenate
cell_type
Homogenate
sample_type
Replicate 6
treatment
EE

Sequenced DNA Library

library_name
CTCF_TEN3_8276_CGTACG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
48568829
Reads aligned (%)
94.7
Duplicates removed (%)
61.8
Number of peaks
36598 (qval < 1E-05)

mm9

Number of total reads
48568829
Reads aligned (%)
94.6
Duplicates removed (%)
61.9
Number of peaks
36585 (qval < 1E-05)

Base call quality data from DBCLS SRA