SRX5379739
ChIP-seq of ISGF3 binding DNA

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Others
Cell type
2fTGH-U6A
NA
NA

Attributes by original data submitter

Sample

isolate
Cancer Cell Line
age
35
biomaterial_provider
George R. Stark, 9500 Euclid Ave, Cleveland, OH 44195 USA
sex
male
tissue
connective tissue
cell_line
U6A
cell_subtype
U6A-T404A-STAT2
cell_type
fibrosarcoma
disease
fibrosarcoma
ethnicity
Caucasian
sample_type
cell culture
treatment
IFN-beta 4h

Sequenced DNA Library

library_name
CL100108483_L02_583
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26220254
Reads aligned (%)
98.9
Duplicates removed (%)
2.8
Number of peaks
248 (qval < 1E-05)

hg19

Number of total reads
26220254
Reads aligned (%)
98.4
Duplicates removed (%)
3.7
Number of peaks
366 (qval < 1E-05)

Base call quality data from DBCLS SRA