Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Kidney
Cell type
Kidney
MeSH Description
Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Attributes by original data submitter

Sample

isolate
deidentified sample obtained from UMASS biobank
age
29-4
biomaterial_provider
UMMS Tissue and Tumor Bank
sex
male
tissue
kidney

Sequenced DNA Library

library_name
Human-ChIPseq-H3K4me3_ChIP-S1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
57061821
Reads aligned (%)
96.6
Duplicates removed (%)
1.7
Number of peaks
13257 (qval < 1E-05)

hg19

Number of total reads
57061821
Reads aligned (%)
95.5
Duplicates removed (%)
2.2
Number of peaks
11687 (qval < 1E-05)

Base call quality data from DBCLS SRA