Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Flk1
cell type
Flk1
cell line
A17Lox
genotype
Sp1KO

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
50,000 cells were washed with PBS and resuspended in transposition reaction buffer with Tn5 transposase and digitonin and incubated at 37degrees for 30mins with shaking. DNA was subsequently purified using the Qiagen Enzymatic Reaction Clean-up kit. Nextera PCR primers were added during PCR amplification of transposed DNA fragments for an appropriate number of cycles determined for each library. Samples were purified using Qiagen Minelute clean-up kit and Ampure beads.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
29763637
Reads aligned (%)
93.4
Duplicates removed (%)
6.5
Number of peaks
4842 (qval < 1E-05)

mm9

Number of total reads
29763637
Reads aligned (%)
93.3
Duplicates removed (%)
6.6
Number of peaks
4858 (qval < 1E-05)

Base call quality data from DBCLS SRA