SRX5369885
GSM3602267: sgOlfr2 e2 CD8rep1 ATACseq; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD8+CD4- T cells
strain
Cas9Tg
cell type
CD4+ T cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
T cells were sorted based on CD8 and CD4 expression after 5 additional days of culture. Libraries were prepared as described in methods.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
52913291
Reads aligned (%)
88.3
Duplicates removed (%)
32.0
Number of peaks
39040 (qval < 1E-05)

mm9

Number of total reads
52913291
Reads aligned (%)
88.2
Duplicates removed (%)
32.2
Number of peaks
38989 (qval < 1E-05)

Base call quality data from DBCLS SRA