SRX5369869
GSM3602251: shRenilla.713 CD8rep1 ATACseq; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD8+CD4- T cells
strain
C57BL/6
cell type
CD8+ T cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
T cells were sorted based on CD8 and CD4 expression after 5 additional days of culture following transduction with shRNA retroviruses. Libraries were prepared as described in methods.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20999356
Reads aligned (%)
95.5
Duplicates removed (%)
35.9
Number of peaks
10857 (qval < 1E-05)

mm9

Number of total reads
20999356
Reads aligned (%)
95.4
Duplicates removed (%)
36.0
Number of peaks
10826 (qval < 1E-05)

Base call quality data from DBCLS SRA