Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embrionic stem cell
cell type
embryonic stem cell
chip antibody
H3K27me2 (Cell Signaling #9728)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1% formaldehyde cross-linked chromatin was sheared by sonication and the DNA fragments associated with the proteins of interest were selectively immunoprecipitated using specific antibodies Libraries were prepared according to Blecher-Gonen R., et al. 2013 and sequenced on Illumina HiSeq 2000 Chip-Seq, ATAC-Seq, SMART-Seq

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
69194484
Reads aligned (%)
96.3
Duplicates removed (%)
18.7
Number of peaks
607 (qval < 1E-05)

mm9

Number of total reads
69194484
Reads aligned (%)
96.1
Duplicates removed (%)
18.7
Number of peaks
705 (qval < 1E-05)

Base call quality data from DBCLS SRA