SRX5353176
GSM3596204: sf5609t End-repair and A-tailing; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Others
Cell type
Tumor
NA
NA

Attributes by original data submitter

Sample

source_name
primary tumor tissue
tissue
primary human patient tumor tissue
antibody
H3K27Ac (Active Motif #39133)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Tissues are homogenized and fixed with 1% FA. Following ChIP and washes, DNA is purified using PCI purification

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
69199959
Reads aligned (%)
92.9
Duplicates removed (%)
2.7
Number of peaks
1181 (qval < 1E-05)

hg19

Number of total reads
69199959
Reads aligned (%)
92.2
Duplicates removed (%)
2.9
Number of peaks
730 (qval < 1E-05)

Base call quality data from DBCLS SRA