Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

NALM-6

Primary Tissue

Blood

Tissue Diagnosis

Leukemia

Sample

source_name

NALM6 B-ALL cells

tissue

Human B-ALL cell line

cell line

NALM6

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

ATAC-sequencing: ATAC-seq library preparation was done as described in (Buenrostro et al. 2013) using Transposomes from Nextera DNA library preparation kit (Illumina, San Diego, CA) and custom primers Libraries were run single read on the Illumina NexSeq500.

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

118282817

Reads aligned (%)

97.0

Duplicates removed (%)

77.7

Number of peaks

40914 (qval < 1E-05)

hg19

Number of total reads

118282817

Reads aligned (%)

96.7

Duplicates removed (%)

78.1

Number of peaks

40851 (qval < 1E-05)