Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cell
background
Rw4 (129X1/SvJ)
condition
2i
antibody
Input
minute-pool
Pool3
supplementary file scaling
1x genome coverage

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cell lysis immediately followed by MNase digestion of native chromatin, T7-adapter ligation, pool-and-split multiplexing, immunoprecipitation and magnetic bead isolation of immunoprecipitated DNA. Illumnina library preparation by in vitro transcription, reverse transcription and library PCR (see manuscript).

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
8930497
Reads aligned (%)
78.0
Duplicates removed (%)
1.4
Number of peaks
198 (qval < 1E-05)

mm9

Number of total reads
8930497
Reads aligned (%)
77.9
Duplicates removed (%)
1.6
Number of peaks
200 (qval < 1E-05)

Base call quality data from DBCLS SRA