SRX534900
BRG1 knockdown input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
No description
Cell type
NA
NA
NA

Attributes by original data submitter

Sample

collection_date
na
environment_biome
na
feature
na
geo_loc_name
na
host
na
lat_lon
na
material
embryonic stem cells derived from inner cell mass
blood_blood_disord
blood_blood_disord2
host_age
in vitro fertilized embryos

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18718681
Reads aligned (%)
95.2
Duplicates removed (%)
2.2
Number of peaks
593 (qval < 1E-05)

hg19

Number of total reads
18718681
Reads aligned (%)
94.5
Duplicates removed (%)
2.8
Number of peaks
690 (qval < 1E-05)

Base call quality data from DBCLS SRA