Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Lung
Cell type
MLE 12
Tissue
Lung
Cell Type
Epithelial

Attributes by original data submitter

Sample

source_name
H3K27me3 ChIP-Seq of Lmnb1 KD MLE12 cells
cell line
MLE-12
cell type
Lung epithelial cells
sample description
H3K27me3 ChIP-Seq of Lmnb1 KD MLE12 cells
chip antibody
H3K27me3 (Millipore, 07-449)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei of MLE12 cells were disrupted and sonicated to yield fragment size ranging from 200-500bp. Lysates were incubated with indicated primary antibody, bound DNA was purified using Qiagen mini elute PCR purification kit. Clontech DNA SMART™ ChIP-Seq Kit Sequencing on the NextSeq500 instrument (Illumina) using v2 chemistry, resulting in minimum of 20M reads per library with 1x75bp single end setup.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
20588797
Reads aligned (%)
79.3
Duplicates removed (%)
33.6
Number of peaks
156 (qval < 1E-05)

mm9

Number of total reads
20588797
Reads aligned (%)
79.2
Duplicates removed (%)
33.7
Number of peaks
155 (qval < 1E-05)

Base call quality data from DBCLS SRA