SRX5342299
GSM3592528: 170T ATAC; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Thymus
NA
NA

Attributes by original data submitter

Sample

source_name
thymus
strain
C57BL/6
protocol
ATAC-sequencing

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
all libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
65112085
Reads aligned (%)
91.6
Duplicates removed (%)
21.7
Number of peaks
30954 (qval < 1E-05)

mm9

Number of total reads
65112085
Reads aligned (%)
91.5
Duplicates removed (%)
21.7
Number of peaks
30918 (qval < 1E-05)

Base call quality data from DBCLS SRA