SRX5342292
GSM3592521: M333S ATAC; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Spleen
Cell type
Spleen
MeSH Description
An encapsulated lymphatic organ through which venous blood filters.

Attributes by original data submitter

Sample

source_name
spleen
strain
C57BL/6
protocol
ATAC-sequencing

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
all libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
85979732
Reads aligned (%)
92.1
Duplicates removed (%)
46.4
Number of peaks
46941 (qval < 1E-05)

mm9

Number of total reads
85979732
Reads aligned (%)
92.0
Duplicates removed (%)
46.5
Number of peaks
46924 (qval < 1E-05)

Base call quality data from DBCLS SRA