Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
SMS-CTR
NA
NA

Attributes by original data submitter

Sample

source_name
SMS-CTR_DMSO_Input
cell type
Rhabdomyosarcoma
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody following the Active Motif's instructions of the ChIP-IT High Sensitivity Kit. Libraries were prepared according to Illumina's TruSeq ChIP Sample Preparation Guide.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
25159522
Reads aligned (%)
95.6
Duplicates removed (%)
6.2
Number of peaks
5052 (qval < 1E-05)

hg19

Number of total reads
25159522
Reads aligned (%)
94.5
Duplicates removed (%)
8.3
Number of peaks
5363 (qval < 1E-05)

Base call quality data from DBCLS SRA