Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Muscle
Cell type
SMS-CTR
NA
NA

Attributes by original data submitter

Sample

source_name
SMS-CTR cells
cell type
Rhabdomyosarcoma
genotype
stably transfected with CASZ1b, Dox inducible
dox status
No dox
chip antibody
H3K27me3 (Millipore, 07-449)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody following the Active Motif's instructions of the ChIP-IT High Sensitivity Kit. Libraries were prepared according to Illumina's TruSeq ChIP Sample Preparation Guide.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
31309801
Reads aligned (%)
91.7
Duplicates removed (%)
25.1
Number of peaks
495 (qval < 1E-05)

hg19

Number of total reads
31309801
Reads aligned (%)
91.4
Duplicates removed (%)
25.4
Number of peaks
497 (qval < 1E-05)

Base call quality data from DBCLS SRA