SRX5340861
GSM3592251: 143B rhoZero CTL H3K27ac rep1 control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Bone
Cell type
143B
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
143B rhoZero H3K27ac control, input DNA
cell type
143B
chip antibody
H3K27ac (Active Motif)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated from sonicated formaldehyde-fixed pellets by chromatin immunoprecipitation

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
65629982
Reads aligned (%)
98.4
Duplicates removed (%)
1.9
Number of peaks
324 (qval < 1E-05)

hg19

Number of total reads
65629982
Reads aligned (%)
98.0
Duplicates removed (%)
2.0
Number of peaks
275 (qval < 1E-05)

Base call quality data from DBCLS SRA