SRX5340856
GSM3592246: 143B rhoZero H3K9ac rep2 treat; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9ac

Cell type

Cell type Class
Bone
Cell type
143B
Primary Tissue
Bone
Tissue Diagnosis
Osteosarcoma

Attributes by original data submitter

Sample

source_name
143B rhoZero H3K9ac
cell type
143B
chip antibody
H3K9ac (Active Motif)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA was isolated from sonicated formaldehyde-fixed pellets by chromatin immunoprecipitation

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
76256728
Reads aligned (%)
99.1
Duplicates removed (%)
18.3
Number of peaks
51044 (qval < 1E-05)

hg19

Number of total reads
76256728
Reads aligned (%)
98.9
Duplicates removed (%)
18.4
Number of peaks
50832 (qval < 1E-05)

Base call quality data from DBCLS SRA