SRX5315587
GSM3585968: GEN1C sgDDX6 H3K9me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
human induced pluripotent stem cells
cell type
primed hiPSCs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1 million cells were washed once with PBS and fixed in 1% formaldehyde

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19884235
Reads aligned (%)
97.0
Duplicates removed (%)
10.8
Number of peaks
9344 (qval < 1E-05)

hg19

Number of total reads
19884235
Reads aligned (%)
95.8
Duplicates removed (%)
13.2
Number of peaks
9090 (qval < 1E-05)

Base call quality data from DBCLS SRA