SRX5315586
GSM3585967: GEN1C sgDDX6 H3K27ac; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
human induced pluripotent stem cells
cell type
primed hiPSCs

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1 million cells were washed once with PBS and fixed in 1% formaldehyde

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19574585
Reads aligned (%)
96.6
Duplicates removed (%)
5.4
Number of peaks
6945 (qval < 1E-05)

hg19

Number of total reads
19574585
Reads aligned (%)
96.5
Duplicates removed (%)
6.3
Number of peaks
6883 (qval < 1E-05)

Base call quality data from DBCLS SRA