SRX5312187
GSM3584943: 2h mock D183; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
PBMC
Tissue
blood
Lineage
mesoderm
Description
peripheral blood mononuclear cells

Attributes by original data submitter

Sample

source_name
PBMCs
time
2
treatment_code
mock
donor_code
D183

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nuclei from 50,000 sorted DCs were subjected to a transposase reaction as described in Buenrostro, 2013. Sequencing libraries were constructed using a modified version of the Illumina Nextera DNA Sample prep kit.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18280035
Reads aligned (%)
76.2
Duplicates removed (%)
59.6
Number of peaks
6295 (qval < 1E-05)

hg19

Number of total reads
18280035
Reads aligned (%)
76.0
Duplicates removed (%)
59.7
Number of peaks
6291 (qval < 1E-05)

Base call quality data from DBCLS SRA