SRX530903
GSM1377539: Primary MEF Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
MEF, input
strain/background
mixed (C57BL/6; 129Sv/J)
tissue
13.5-day embryo
cell type
primary mouse embryonic fibroblasts
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Input and immunoprecipitated DNA were purified and prepared for Illumina/Solexa sequencing following their standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
129045830
Reads aligned (%)
93.0
Duplicates removed (%)
65.0
Number of peaks
1027 (qval < 1E-05)

mm9

Number of total reads
129045830
Reads aligned (%)
92.8
Duplicates removed (%)
65.0
Number of peaks
1114 (qval < 1E-05)

Base call quality data from DBCLS SRA