Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2C

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived epidermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
TetO-TFAP2C hESC differentiation at Day7 with Dox
cell type
early epidemal differentiated human emryonic stem cell (hESC)
genotype
TetO-TFAP2C
treatment and stage
early differentiaiton with Dox for 7 days
chip antibody
TFAP2C; Santa Cruz Cat #sc-8977X

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
91351645
Reads aligned (%)
13.7
Duplicates removed (%)
85.5
Number of peaks
1862 (qval < 1E-05)

hg38

Number of total reads
91351645
Reads aligned (%)
15.5
Duplicates removed (%)
83.8
Number of peaks
2282 (qval < 1E-05)

Base call quality data from DBCLS SRA