Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR1H4

Cell type

Cell type Class
Liver
Cell type
Hepatocytes
MeSH Description
The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Attributes by original data submitter

Sample

source_name
primary human hepatocytes
tissue
Liver
chip antibody
FXR (1:1 mixture of sc-1204x and sc-13063x, ChIP grade, Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed, lysed, sonicated. Chromatin were pulled down by antibody Illumina TrueSeqTM DNA Sample Prep Kit (San Diego, CA)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
17978674
Reads aligned (%)
125.8
Duplicates removed (%)
10.5
Number of peaks
979 (qval < 1E-05)

hg38

Number of total reads
17978674
Reads aligned (%)
127.4
Duplicates removed (%)
10.4
Number of peaks
1113 (qval < 1E-05)

Base call quality data from DBCLS SRA