Antigen

Antigen Class

TFs and others

Antigen

NR1H4

Cell type

Cell type Class

Liver

Cell type

Hepatocytes

MeSH Description

The main structural component of the LIVER. They are specialized EPITHELIAL CELLS that are organized into interconnected plates called lobules.

Sample

source_name

primary human hepatocytes

tissue

Liver

chip antibody

FXR (1:1 mixture of sc-1204x and sc-13063x, ChIP grade, Santa Cruz)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were fixed, lysed, sonicated. Chromatin were pulled down by antibody Illumina TrueSeqTM DNA Sample Prep Kit (San Diego, CA)

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

17978674

Reads aligned (%)

71.1

Duplicates removed (%)

10.4

Number of peaks

1113 (qval < 1E-05)

hg19

Number of total reads

17978674

Reads aligned (%)

70.3

Duplicates removed (%)

10.5

Number of peaks

979 (qval < 1E-05)