Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Macrophages
MeSH Description
The relatively long-lived phagocytic cell of mammalian tissues that are derived from blood MONOCYTES. Main types are PERITONEAL MACROPHAGES; ALVEOLAR MACROPHAGES; HISTIOCYTES; KUPFFER CELLS of the liver; and OSTEOCLASTS. They may further differentiate within chronic inflammatory lesions to EPITHELIOID CELLS or may fuse to form FOREIGN BODY GIANT CELLS or LANGHANS GIANT CELLS. (from The Dictionary of Cell Biology, Lackie and Dow, 3rd ed.)

Attributes by original data submitter

Sample

source_name
Peritoneal lavage
strain
C57BL/6
treatment
untreated
tx conditions
NA
cell type
LPM
chip antibody
none
gender
male

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Bhlhe40 immunoprecipitation of bound, crosslinked DNA from LPMs Genome Technology Access core (WUSTL)

Sequencing Platform

instrument_model
Illumina HiSeq 3000

mm10

Number of total reads
72572802
Reads aligned (%)
98.7
Duplicates removed (%)
19.6
Number of peaks
751 (qval < 1E-05)

mm9

Number of total reads
72572802
Reads aligned (%)
98.4
Duplicates removed (%)
19.6
Number of peaks
858 (qval < 1E-05)

Base call quality data from DBCLS SRA