Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14Tga2-CTCF-GFP-Tir1-TIGER_ZF1d_Rescue
genotype
embryonic stem cells
antibody
Anti-CTCF antibody - ChIP Grade, ab70303

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were fixed with 1% Formaldehyde. Nuclei were isolated and chromatin was fragmented. Chromatin immunoprecipitation (ChIP) was performed and the libraries were prepared using the eluted DNA from ChIP Kapa Library Prep Kit following the manufacturer's instructions

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
76881955
Reads aligned (%)
80.6
Duplicates removed (%)
30.3
Number of peaks
43024 (qval < 1E-05)

mm9

Number of total reads
76881955
Reads aligned (%)
80.4
Duplicates removed (%)
31.2
Number of peaks
43064 (qval < 1E-05)

Base call quality data from DBCLS SRA