Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

Experimental details
H3K27ac ChIP of wt25Tet3 mESCs replicate 1 PE Read 1
strain
mixed C57BL/6J-129V background
dev_stage
embryonic stem cells stage
sex
female
tissue
Mouse embryonic stem cells
cell_type
Embryonic stem cells
collected_by
Temasek Life Sciences laboratory
genotype
Wt25-wild type Tet3 in Tet1,2,3 triple knockout background.
growth_protocol
Tet1, 2 and 3 triple knockout (TKO) mouse embryonic stems (mESC) of mixed C57BL/6J-129V backgrounds (Hu et al., 2014) was cultured in 2i media composed of DMEM GlutaMax 1 mM PD0325901 (StemGent), and 3 mM CHIR99021 (Axon Medchem), 1000 U/ml murine leukemia inhibitory factor (LIF, Chemicon), and 1 × penicillin/streptomycin (PS, Gibco-BRL).
sample_type
Cell culture

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
31257013
Reads aligned (%)
98.9
Duplicates removed (%)
17.0
Number of peaks
8815 (qval < 1E-05)

mm9

Number of total reads
31257013
Reads aligned (%)
98.8
Duplicates removed (%)
17.1
Number of peaks
8775 (qval < 1E-05)

Base call quality data from DBCLS SRA