SRX5278547
ChIP-seq profiling of human 501mel melanoma cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Epidermis
Cell type
501A
Primary Tissue
Skin
Tissue Diagnosis
Melanoma

Attributes by original data submitter

Sample

isolate
not available
age
not available
biomaterial_provider
William J. Pavan, 40 Convent Dr, NIH Bldg 49, MSC 4472, Bethesda, MD 20892
sex
not available
tissue
not available
cell_line
501mel

Sequenced DNA Library

library_name
SOX10 ChIPseq Input (+DMSO)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
71984131
Reads aligned (%)
92.0
Duplicates removed (%)
10.5
Number of peaks
2029 (qval < 1E-05)

hg19

Number of total reads
71984131
Reads aligned (%)
91.0
Duplicates removed (%)
12.4
Number of peaks
1708 (qval < 1E-05)

Base call quality data from DBCLS SRA