Antigen

Antigen Class

Histone

Antigen

H3K9ac

Cell type

Cell type Class

Blood

Cell type

Lymphoma, T-Cell

MeSH Description

A group of heterogeneous lymphoid tumors representing malignant transformations of T-lymphocytes.

Sample

source_name

EL4

cell type

T lymphocyte lymphoma

antibody

H3K9Ac

strain

C57BL/6N

chip antibody

H3K9Ac (Abcam ab4441)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were chemically cross-linked by 1% formaldehyde. Samples were sonicated and protein-DNA complexes were isolated with antibody. Libraries were prepared according to instructions accompanying the NEBNext Ultra II Library Prep Kit for Illuina (Part# E7645S). Indexed libraries were validated for quality and size distribution using a TapeStation 2200 (Agilent). Paired end sequencing (38 bp+37 bp) was performed on a NextSeq 550 following the manufacturer's protocol.

Sequencing Platform

instrument_model

NextSeq 550

mm10

Number of total reads

29942487

Reads aligned (%)

93.0

Duplicates removed (%)

2.7

Number of peaks

20974 (qval < 1E-05)

mm9

Number of total reads

29942487

Reads aligned (%)

92.7

Duplicates removed (%)

2.8

Number of peaks

20935 (qval < 1E-05)