SRX5261139
GSM3568864: ChIP E65Epi H3K4me3 rep1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
Epiblast
NA
NA

Attributes by original data submitter

Sample

source_name
embryo
tissue
epiblast
genotype
WT
chip antibody
H3K4me3(home made)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The DNA extraction follows STAR ChIP-seq protocol. The STAR ChIP-seq libraries were generated following the protocol as described previously(Zhang et al., 2016).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
25054687
Reads aligned (%)
25.2
Duplicates removed (%)
24.0
Number of peaks
331 (qval < 1E-05)

mm9

Number of total reads
25054687
Reads aligned (%)
61.3
Duplicates removed (%)
28.0
Number of peaks
7095 (qval < 1E-05)

Base call quality data from DBCLS SRA