SRX5261136
GSM3568861: ATAC End rep2; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Endoderm
MeSH Description
The inner of the three germ layers of an embryo.

Attributes by original data submitter

Sample

source_name
embryo
tissue
endoderm
genotype
WT

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
The DNA extraction follows miniATAC-seq protocol. The miniATAC-seq libraries were generated following the protocol as described previously(Wu et al., 2018).

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9292126
Reads aligned (%)
65.6
Duplicates removed (%)
36.7
Number of peaks
417 (qval < 1E-05)

mm9

Number of total reads
9292126
Reads aligned (%)
65.6
Duplicates removed (%)
36.7
Number of peaks
406 (qval < 1E-05)

Base call quality data from DBCLS SRA