Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Embryo

Cell type

Primitive Streak

MeSH Description

A linear band of rapidly proliferating cells that begins near the posterior end of an embryo and grows cranially. Primitive streak is formed during GASTRULATION by the convergent migration of primary ectodermal cells (EPIBLAST). The knot at the tip of the streak is called HENSEN NODE.

Sample

source_name

embryo

tissue

primitive streak

genotype

WT

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

The DNA extraction follows miniATAC-seq protocol. The miniATAC-seq libraries were generated following the protocol as described previously(Wu et al., 2018).

Sequencing Platform

instrument_model

HiSeq X Ten

mm10

Number of total reads

13255049

Reads aligned (%)

73.0

Duplicates removed (%)

31.2

Number of peaks

11185 (qval < 1E-05)

mm9

Number of total reads

13255049

Reads aligned (%)

72.9

Duplicates removed (%)

31.2

Number of peaks

11243 (qval < 1E-05)