Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Prostate

Cell type

LNCAP

Primary Tissue

Prostate

Tissue Diagnosis

Carcinoma

Sample

source_name

LNCaP

tissue

Prostate Cancer

cell line

LNCaP

treatment

parental line

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Total RNA was isolated using miRNeasy Kit (Invitrogen) following the manufacturer's instructions. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

28659680

Reads aligned (%)

95.8

Duplicates removed (%)

1.1

Number of peaks

17060 (qval < 1E-05)

hg19

Number of total reads

28659680

Reads aligned (%)

95.2

Duplicates removed (%)

1.2

Number of peaks

16661 (qval < 1E-05)