Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP
tissue
Prostate Cancer
cell line
VCaP
treatment
AR stimulation (6h)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Total RNA was isolated using miRNeasy Kit (Invitrogen) following the manufacturer's instructions. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
34923956
Reads aligned (%)
84.8
Duplicates removed (%)
3.2
Number of peaks
4349 (qval < 1E-05)

hg19

Number of total reads
34923956
Reads aligned (%)
84.0
Duplicates removed (%)
3.3
Number of peaks
3910 (qval < 1E-05)

Base call quality data from DBCLS SRA