Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Macrophages
MeSH Description
The relatively long-lived phagocytic cell of mammalian tissues that are derived from blood MONOCYTES. Main types are PERITONEAL MACROPHAGES; ALVEOLAR MACROPHAGES; HISTIOCYTES; KUPFFER CELLS of the liver; and OSTEOCLASTS. They may further differentiate within chronic inflammatory lesions to EPITHELIOID CELLS or may fuse to form FOREIGN BODY GIANT CELLS or LANGHANS GIANT CELLS. (from The Dictionary of Cell Biology, Lackie and Dow, 3rd ed.)

Attributes by original data submitter

Sample

breed
C57BL/6
age
3 months
sex
male
tissue
bone marrow
cell_type
bone marrow derived macrophage
genotype
wild type
growth_protocol
MCSF

Sequenced DNA Library

library_name
mm_BMDM_24hIL4_RNAPIIpS2_tc_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
19569402
Reads aligned (%)
96.9
Duplicates removed (%)
7.8
Number of peaks
26379 (qval < 1E-05)

mm9

Number of total reads
19569402
Reads aligned (%)
96.8
Duplicates removed (%)
7.9
Number of peaks
26367 (qval < 1E-05)

Base call quality data from DBCLS SRA